Console Output
Established TCP socket on 43895
<===[JENKINS REMOTING CAPACITY]===> channel started
Executing Maven: -B -f /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/pom.xml clean install javadoc:javadoc
[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for org.dataone:d1_cn_common:jar:2.4.0-SNAPSHOT
[WARNING] 'build.plugins.plugin.version' for com.mycila.maven-license-plugin:maven-license-plugin is missing. @ line 269, column 21
[WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-compiler-plugin is missing. @ line 223, column 21
[WARNING] 'build.plugins.plugin.version' for org.codehaus.mojo:buildnumber-maven-plugin is missing. @ line 231, column 21
[WARNING] 'build.plugins.plugin.version' for org.apache.felix:maven-bundle-plugin is missing. @ line 276, column 21
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING]
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building DataONE_Cn_Common 2.4.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.3:clean (default-clean) @ d1_cn_common ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ d1_cn_common ---
[INFO] Executing: /bin/sh -c cd '/var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common' && 'svn' '--non-interactive' 'info'
[INFO] Working directory: /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common
[INFO] Storing buildNumber: 19369 at timestamp: 1539116960075
[INFO] Executing: /bin/sh -c cd '/var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common' && 'svn' '--non-interactive' 'info'
[INFO] Working directory: /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common
[INFO] Storing buildScmBranch: trunk
[INFO]
[INFO] --- maven-resources-plugin:2.3:resources (default-resources) @ d1_cn_common ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:2.0.2:compile (default-compile) @ d1_cn_common ---
[INFO] Compiling 47 source files to /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/classes
[INFO]
[INFO] --- maven-resources-plugin:2.3:testResources (default-testResources) @ d1_cn_common ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 5 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.0.2:testCompile (default-testCompile) @ d1_cn_common ---
[INFO] Compiling 11 source files to /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/test-classes
[INFO]
[INFO] --- maven-surefire-plugin:2.10:test (default-test) @ d1_cn_common ---
[INFO] Surefire report directory: /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase
20181009-20:29:24: [INFO]: proxy.request RequestURL: http://localhost:80/Mock/object/?fromDate=2012-03-07T22:00:00%2B00:00 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request RequestURI: /Mock/object/?fromDate=2012-03-07T22:00:00%2B00:00 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request PathInfo: null [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request PathTranslated: null [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request QueryString: null [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request ContextPath: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request ServletPath: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request Method: GET [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request toString:org.springframework.mock.web.MockHttpServletRequest@4b952a2d [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.request.ParameterMap: fromDate 2012-03-07T22:00:00+00:00 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper RequestURL: http://localhost:80/Mock/object/?fromDate=2012-03-07T22:00:00%2B00:00 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper RequestURI: /Mock/object/?fromDate=2012-03-07T22:00:00%2B00:00 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper PathInfo: null [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper PathTranslated: null [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper QueryString: fromDate=2012-03-07T22:00:00%2B00:00 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper ContextPath: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper ServletPath: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper Method: GET [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper toString: org.dataone.cn.servlet.http.ProxyServletRequestWrapper@3159c4b8 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: proxy.wrapper.ParameterMap: fromDate 2012-03-07T22:00:00+00:00 [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
20181009-20:29:24: [INFO]: [org.dataone.cn.servlet.http.ProxyServletRequestWrapperTestCase]
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.186 sec
Running org.dataone.cn.ldap.LDAPServiceSuiteTest
20181009-20:29:25: [WARN]: ApacheDS shutdown hook has NOT been registered with the runtime. This default setting for standalone operation has been overriden. [org.apache.directory.server.core.DefaultDirectoryService]
20181009-20:29:28: [WARN]: You didn't change the admin password of directory service instance 'org'. Please update the admin password as soon as possible to prevent a possible security breach. [org.apache.directory.server.core.DefaultDirectoryService]
20181009-20:29:30: [DEBUG]: Using partition factory JdbmPartitionFactory [org.dataone.test.apache.directory.server.integ.ApacheDSSuiteRunner]
20181009-20:29:30: [DEBUG]: ClassLoader type: AppClassLoader [org.dataone.configuration.Settings]
20181009-20:29:30: [DEBUG]: TestSettings not found: assume production context [org.dataone.configuration.Settings]
20181009-20:29:30: [DEBUG]: Loading configuration: file:/var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/test-classes/org/dataone/configuration/config.xml [org.dataone.configuration.Settings]
20181009-20:29:30: [DEBUG]: Creating configuration null with name null [org.apache.commons.configuration.DefaultConfigurationBuilder]
20181009-20:29:30: [DEBUG]: Base path set to file:///var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/test-classes/org/dataone/configuration/ [org.apache.commons.configuration.PropertiesConfiguration]
20181009-20:29:30: [DEBUG]: Setting default value: false [org.apache.commons.beanutils.converters.BooleanConverter]
20181009-20:29:30: [DEBUG]: Converting 'Boolean' value 'false' to type 'Boolean' [org.apache.commons.beanutils.converters.BooleanConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Boolean [org.apache.commons.beanutils.converters.BooleanConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.ByteConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Byte' [org.apache.commons.beanutils.converters.ByteConverter]
20181009-20:29:30: [DEBUG]: Converted to Byte value '0' [org.apache.commons.beanutils.converters.ByteConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [org.apache.commons.beanutils.converters.CharacterConverter]
20181009-20:29:30: [DEBUG]: Converting 'Character' value ' ' to type 'Character' [org.apache.commons.beanutils.converters.CharacterConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Character [org.apache.commons.beanutils.converters.CharacterConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.DoubleConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Double' [org.apache.commons.beanutils.converters.DoubleConverter]
20181009-20:29:30: [DEBUG]: Converted to Double value '0.0' [org.apache.commons.beanutils.converters.DoubleConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.FloatConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Float' [org.apache.commons.beanutils.converters.FloatConverter]
20181009-20:29:30: [DEBUG]: Converted to Float value '0.0' [org.apache.commons.beanutils.converters.FloatConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.IntegerConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Integer' [org.apache.commons.beanutils.converters.IntegerConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Integer [org.apache.commons.beanutils.converters.IntegerConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.LongConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Long' [org.apache.commons.beanutils.converters.LongConverter]
20181009-20:29:30: [DEBUG]: Converted to Long value '0' [org.apache.commons.beanutils.converters.LongConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.ShortConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Short' [org.apache.commons.beanutils.converters.ShortConverter]
20181009-20:29:30: [DEBUG]: Converted to Short value '0' [org.apache.commons.beanutils.converters.ShortConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0.0 [org.apache.commons.beanutils.converters.BigDecimalConverter]
20181009-20:29:30: [DEBUG]: Converting 'BigDecimal' value '0.0' to type 'BigDecimal' [org.apache.commons.beanutils.converters.BigDecimalConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a BigDecimal [org.apache.commons.beanutils.converters.BigDecimalConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.BigIntegerConverter]
20181009-20:29:30: [DEBUG]: Converting 'BigInteger' value '0' to type 'BigInteger' [org.apache.commons.beanutils.converters.BigIntegerConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a BigInteger [org.apache.commons.beanutils.converters.BigIntegerConverter]
20181009-20:29:30: [DEBUG]: Setting default value: false [org.apache.commons.beanutils.converters.BooleanConverter]
20181009-20:29:30: [DEBUG]: Converting 'Boolean' value 'false' to type 'Boolean' [org.apache.commons.beanutils.converters.BooleanConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Boolean [org.apache.commons.beanutils.converters.BooleanConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.ByteConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Byte' [org.apache.commons.beanutils.converters.ByteConverter]
20181009-20:29:30: [DEBUG]: Converted to Byte value '0' [org.apache.commons.beanutils.converters.ByteConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [org.apache.commons.beanutils.converters.CharacterConverter]
20181009-20:29:30: [DEBUG]: Converting 'Character' value ' ' to type 'Character' [org.apache.commons.beanutils.converters.CharacterConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Character [org.apache.commons.beanutils.converters.CharacterConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.DoubleConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Double' [org.apache.commons.beanutils.converters.DoubleConverter]
20181009-20:29:30: [DEBUG]: Converted to Double value '0.0' [org.apache.commons.beanutils.converters.DoubleConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.FloatConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Float' [org.apache.commons.beanutils.converters.FloatConverter]
20181009-20:29:30: [DEBUG]: Converted to Float value '0.0' [org.apache.commons.beanutils.converters.FloatConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.IntegerConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Integer' [org.apache.commons.beanutils.converters.IntegerConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Integer [org.apache.commons.beanutils.converters.IntegerConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.LongConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Long' [org.apache.commons.beanutils.converters.LongConverter]
20181009-20:29:30: [DEBUG]: Converted to Long value '0' [org.apache.commons.beanutils.converters.LongConverter]
20181009-20:29:30: [DEBUG]: Setting default value: 0 [org.apache.commons.beanutils.converters.ShortConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer' value '0' to type 'Short' [org.apache.commons.beanutils.converters.ShortConverter]
20181009-20:29:30: [DEBUG]: Converted to Short value '0' [org.apache.commons.beanutils.converters.ShortConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [org.apache.commons.beanutils.converters.StringConverter]
20181009-20:29:30: [DEBUG]: Converting 'String' value '' to type 'String' [org.apache.commons.beanutils.converters.StringConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Z@18da4dd [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'boolean[]' value '[Z@18da4dd' to type 'boolean[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a boolean[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [B@31a3f4de [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'byte[]' value '[B@31a3f4de' to type 'byte[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a byte[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [C@68880c21 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'char[]' value '[C@68880c21' to type 'char[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a char[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [D@2dd2e270 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'double[]' value '[D@2dd2e270' to type 'double[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a double[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [F@4195105b [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'float[]' value '[F@4195105b' to type 'float[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a float[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [I@6f3e19b3 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'int[]' value '[I@6f3e19b3' to type 'int[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a int[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [J@47ffe971 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'long[]' value '[J@47ffe971' to type 'long[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a long[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [S@7d04529c [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'short[]' value '[S@7d04529c' to type 'short[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a short[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.math.BigDecimal;@14fa92af [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@14fa92af' to type 'BigDecimal[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a BigDecimal[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.math.BigInteger;@339a3670 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@339a3670' to type 'BigInteger[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a BigInteger[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Boolean;@2c7a8af2 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Boolean[]' value '[Ljava.lang.Boolean;@2c7a8af2' to type 'Boolean[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Boolean[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Byte;@720bf653 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Byte[]' value '[Ljava.lang.Byte;@720bf653' to type 'Byte[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Byte[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Character;@4edef76c [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Character[]' value '[Ljava.lang.Character;@4edef76c' to type 'Character[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Character[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Double;@70c53dbe [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Double[]' value '[Ljava.lang.Double;@70c53dbe' to type 'Double[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Double[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Float;@21c815e4 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Float[]' value '[Ljava.lang.Float;@21c815e4' to type 'Float[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Float[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Integer;@2a331b46 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Integer[]' value '[Ljava.lang.Integer;@2a331b46' to type 'Integer[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Integer[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Long;@743e66f7 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Long[]' value '[Ljava.lang.Long;@743e66f7' to type 'Long[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Long[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Short;@2241f05b [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Short[]' value '[Ljava.lang.Short;@2241f05b' to type 'Short[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Short[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.String;@71978f46 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'String[]' value '[Ljava.lang.String;@71978f46' to type 'String[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a String[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.lang.Class;@1d23ff23 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Class[]' value '[Ljava.lang.Class;@1d23ff23' to type 'Class[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Class[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.util.Date;@2133661d [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Date[]' value '[Ljava.util.Date;@2133661d' to type 'Date[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Date[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.util.Calendar;@3414a8c3 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'Calendar[]' value '[Ljava.util.Calendar;@3414a8c3' to type 'Calendar[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a Calendar[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.io.File;@cf518cf [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'java.io.File[]' value '[Ljava.io.File;@cf518cf' to type 'java.io.File[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a java.io.File[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.sql.Date;@68d651f2 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@68d651f2' to type 'java.sql.Date[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a java.sql.Date[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.sql.Time;@1e43e323 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@1e43e323' to type 'java.sql.Time[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a java.sql.Time[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.sql.Timestamp;@10643593 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@10643593' to type 'java.sql.Timestamp[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a java.sql.Timestamp[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Setting default value: [Ljava.net.URL;@eca6a74 [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Converting 'java.net.URL[]' value '[Ljava.net.URL;@eca6a74' to type 'java.net.URL[]' [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: No conversion required, value is already a java.net.URL[] [org.apache.commons.beanutils.converters.ArrayConverter]
20181009-20:29:30: [DEBUG]: Convert string 'test-jdbc.properties' to class 'java.lang.String' [org.apache.commons.beanutils.ConvertUtils]
20181009-20:29:30: [DEBUG]: Converting 'String' value 'test-jdbc.properties' to type 'String' [org.apache.commons.beanutils.converters.StringConverter]
20181009-20:29:30: [DEBUG]: FileName set to test-jdbc.properties [org.apache.commons.configuration.PropertiesConfiguration]
20181009-20:29:30: [DEBUG]: ConfigurationUtils.locate(): base is file:///var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/test-classes/org/dataone/configuration/, name is test-jdbc.properties [org.apache.commons.configuration.ConfigurationUtils]
20181009-20:29:30: [DEBUG]: Creating configuration null with name null [org.apache.commons.configuration.DefaultConfigurationBuilder]
20181009-20:29:30: [DEBUG]: Base path set to file:///var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/test-classes/org/dataone/configuration/ [org.apache.commons.configuration.PropertiesConfiguration]
20181009-20:29:30: [DEBUG]: Convert string 'test-ldap.properties' to class 'java.lang.String' [org.apache.commons.beanutils.ConvertUtils]
20181009-20:29:30: [DEBUG]: Converting 'String' value 'test-ldap.properties' to type 'String' [org.apache.commons.beanutils.converters.StringConverter]
20181009-20:29:30: [DEBUG]: FileName set to test-ldap.properties [org.apache.commons.configuration.PropertiesConfiguration]
20181009-20:29:30: [DEBUG]: ConfigurationUtils.locate(): base is file:///var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/test-classes/org/dataone/configuration/, name is test-ldap.properties [org.apache.commons.configuration.ConfigurationUtils]
20181009-20:29:30: [DEBUG]: Loading configuration: jar:file:/var/lib/jenkins/.m2/repository/org/dataone/d1_common_java/2.4.0-SNAPSHOT/d1_common_java-2.4.0-SNAPSHOT.jar!/org/dataone/configuration/config.xml [org.dataone.configuration.Settings]
20181009-20:29:30: [DEBUG]: creating new context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:31: [DEBUG]: creating new context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:31: [DEBUG]: Destroying context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:31: [DEBUG]: creating new context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:31: [DEBUG]: Destroying context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:31: [DEBUG]: creating new context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:32: [INFO]: Pooled Object Create Date = 2018-29-09 08:29:31.031 Current Time 2018-29-09 08:29:32.032 pooled object idle MS 1000 [org.dataone.cn.ldap.DirContextPooledObjectFactoryTestUnit]
20181009-20:29:32: [DEBUG]: creating new context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:32: [DEBUG]: Active Dir Contexts: 0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: Idle Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: added dirContext #0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Adding: Active Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Adding: Idle Dir Contexts: 0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: creating new context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:32: [DEBUG]: added dirContext #1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Adding: Active Dir Contexts: 2 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Adding: Idle Dir Contexts: 0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [WARN]: Timeout waiting for idle object [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Exception: Active Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Exception: Idle Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: added dirContext #2 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Adding: Active Dir Contexts: 2 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:32: [DEBUG]: After Adding: Idle Dir Contexts: 0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [WARN]: Timeout waiting for idle object [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Exception: Active Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Exception: Idle Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: added dirContext #3 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Adding: Active Dir Contexts: 2 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Adding: Idle Dir Contexts: 0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [WARN]: Timeout waiting for idle object [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Exception: Active Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Exception: Idle Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: added dirContext #4 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Adding: Active Dir Contexts: 2 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Adding: Idle Dir Contexts: 0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Returning: Active Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Returning: Idle Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: Destroying context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
20181009-20:29:33: [DEBUG]: After Returning: Active Dir Contexts: 0 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: After Returning: Idle Dir Contexts: 1 [org.dataone.cn.ldap.DirContextProviderTestUnit]
20181009-20:29:33: [DEBUG]: Added entry DC=test,DC=org [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [DEBUG]: Added entry C=GH,DC=test,DC=org [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [DEBUG]: Added entry O=Clydestone,C=GH,DC=test,DC=org [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [DEBUG]: Added entry OU=Sales,O=Clydestone,C=GH,DC=test,DC=org [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [DEBUG]: Removed entry: OU=Sales,O=Clydestone,C=GH,DC=test,DC=org [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [DEBUG]: Found matching attribute: d1NodeApproved=* [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [DEBUG]: Attribute value: TRUE [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [DEBUG]: Found matching attribute: d1NodeApproved=TRUE [org.dataone.cn.ldap.LDAPService]
20181009-20:29:33: [WARN]: received: javax.naming.ldap.UnsolicitedNotificationEvent[source=com.sun.jndi.ldap.LdapCtx@395d154e]-1.3.6.1.4.1.1466.20036 [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: javax.naming.CommunicationException: Connection closed [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: received: javax.naming.ldap.UnsolicitedNotificationEvent[source=com.sun.jndi.ldap.LdapCtx@42413a7]-1.3.6.1.4.1.1466.20036 [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: javax.naming.CommunicationException: Connection closed [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: received: javax.naming.ldap.UnsolicitedNotificationEvent[source=com.sun.jndi.ldap.LdapCtx@51158bc6]-1.3.6.1.4.1.1466.20036 [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [DEBUG]: Shuting down DS for org [org.dataone.test.apache.directory.server.integ.ApacheDSSuiteRunner]
20181009-20:29:33: [WARN]: received: javax.naming.ldap.UnsolicitedNotificationEvent[source=com.sun.jndi.ldap.LdapCtx@744ee05b]-1.3.6.1.4.1.1466.20036 [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: javax.naming.CommunicationException: Connection closed [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: javax.naming.CommunicationException: Connection closed [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: received: javax.naming.ldap.UnsolicitedNotificationEvent[source=com.sun.jndi.ldap.LdapCtx@3e803b41]-1.3.6.1.4.1.1466.20036 [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: javax.naming.CommunicationException: Connection closed [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: received: javax.naming.ldap.UnsolicitedNotificationEvent[source=com.sun.jndi.ldap.LdapCtx@467144a0]-1.3.6.1.4.1.1466.20036 [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:33: [WARN]: javax.naming.CommunicationException: Connection closed [org.dataone.cn.ldap.DirContextUnsolicitedNotificationListener]
20181009-20:29:34: [ERROR]: javax.naming.CommunicationException: connection closed [Root exception is java.io.IOException: connection closed]; remaining name 'dc=org' [org.dataone.cn.ldap.DirContextPooledObjectFactory]
javax.naming.CommunicationException: connection closed [Root exception is java.io.IOException: connection closed]; remaining name 'dc=org'
at com.sun.jndi.ldap.LdapCtx.doSearch(LdapCtx.java:2002)
at com.sun.jndi.ldap.LdapCtx.doSearchOnce(LdapCtx.java:1933)
at com.sun.jndi.ldap.LdapCtx.c_getAttributes(LdapCtx.java:1325)
at com.sun.jndi.toolkit.ctx.ComponentDirContext.p_getAttributes(ComponentDirContext.java:235)
at com.sun.jndi.toolkit.ctx.PartialCompositeDirContext.getAttributes(PartialCompositeDirContext.java:141)
at com.sun.jndi.toolkit.ctx.PartialCompositeDirContext.getAttributes(PartialCompositeDirContext.java:129)
at javax.naming.directory.InitialDirContext.getAttributes(InitialDirContext.java:142)
at javax.naming.directory.InitialDirContext.getAttributes(InitialDirContext.java:137)
at org.dataone.cn.ldap.DirContextPooledObjectFactory.validateObject(DirContextPooledObjectFactory.java:147)
at org.apache.commons.pool2.impl.GenericObjectPool.evict(GenericObjectPool.java:806)
at org.apache.commons.pool2.impl.BaseGenericObjectPool$Evictor.run(BaseGenericObjectPool.java:1036)
at java.util.TimerThread.mainLoop(Timer.java:555)
at java.util.TimerThread.run(Timer.java:505)
Caused by: java.io.IOException: connection closed
at com.sun.jndi.ldap.LdapClient.ensureOpen(LdapClient.java:1592)
at com.sun.jndi.ldap.LdapClient.search(LdapClient.java:530)
at com.sun.jndi.ldap.LdapCtx.doSearch(LdapCtx.java:1985)
... 12 more
20181009-20:29:34: [DEBUG]: Destroying context [org.dataone.cn.ldap.DirContextPooledObjectFactory]
Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.973 sec
Running org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest
20181009-20:29:34: [DEBUG]: Metacat Data Source JDBC settings: [org.dataone.cn.dao.MetacatDataSourceFactory]
20181009-20:29:34: [DEBUG]: metacat.datasource.url:jdbc:h2:mem:db1 [org.dataone.cn.dao.MetacatDataSourceFactory]
20181009-20:29:34: [DEBUG]: metacat.datasource.driverClass:org.h2.Driver [org.dataone.cn.dao.MetacatDataSourceFactory]
20181009-20:29:34: [DEBUG]: database.user:metacat [org.dataone.cn.dao.MetacatDataSourceFactory]
20181009-20:29:34: [DEBUG]: database.password:metacat [org.dataone.cn.dao.MetacatDataSourceFactory]
20181009-20:29:34: [DEBUG]: metacat.datasource.initialSize:3 [org.dataone.cn.dao.MetacatDataSourceFactory]
20181009-20:29:34: [DEBUG]: metacat.datasource.maxSize:15 [org.dataone.cn.dao.MetacatDataSourceFactory]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('891f20463b023bef25758cabee18b460.1.1', NULL, '1', '2013-08-01 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'c3450ab5803151f78e9e8f91f30f285a', 'MD5', '', '', '2013-08-01 10:17:42.117', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.1.0', '7482', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '709eee7f02ff1f12a9084b906ee0770e', 'MD5', '', '', '2013-07-31 15:29:44.429', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14230', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('261585355b62129e038fabdacc1cd9fa.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eb0b66914142de3e6b2ed949f87096de', 'MD5', '', '', '2013-07-31 15:29:46.774', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14472', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco3-e2fab857d20b994edb1ad65069407423.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '14b343527abc4892fb3b7e50b0b4b096', 'MD5', '', '', '2013-07-31 17:39:09.264', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14514', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco3-f6fcf091959497c2a77967b732d0e631.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'de2c9e3c4a700e3816d4140b8319cce0', 'MD5', '', '', '2013-07-31 17:39:11.085', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '13424', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-6f632bd1cc2772bdcc43bafdbb9d8669.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '709eee7f02ff1f12a9084b906ee0770e', 'MD5', '', '', '2013-07-31 17:41:34.387', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14230', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-261585355b62129e038fabdacc1cd9fa.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eb0b66914142de3e6b2ed949f87096de', 'MD5', '', '', '2013-07-31 17:41:36.253', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14472', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-e2fab857d20b994edb1ad65069407423.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '14b343527abc4892fb3b7e50b0b4b096', 'MD5', '', '', '2013-07-31 17:41:38.243', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14514', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-f6fcf091959497c2a77967b732d0e631.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'de2c9e3c4a700e3816d4140b8319cce0', 'MD5', '', '', '2013-07-31 17:41:40.2', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '13424', false, false, -1, NULL, NULL); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-774d0eb40bb051046a5469be7d912d30.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '1842c6ce6c398afe62f15a01063b39a9', 'MD5', '', '', '2013-07-31 17:41:42.331', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '17211', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL query [SELECT count(guid) FROM systemmetadata] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('891f20463b023bef25758cabee18b460.1.1', NULL, '1', '2013-08-01 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'c3450ab5803151f78e9e8f91f30f285a', 'MD5', '', '', '2013-08-01 10:17:42.117', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.1.0', '7482', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '709eee7f02ff1f12a9084b906ee0770e', 'MD5', '', '', '2013-07-31 15:29:44.429', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14230', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('261585355b62129e038fabdacc1cd9fa.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eb0b66914142de3e6b2ed949f87096de', 'MD5', '', '', '2013-07-31 15:29:46.774', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14472', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco3-e2fab857d20b994edb1ad65069407423.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '14b343527abc4892fb3b7e50b0b4b096', 'MD5', '', '', '2013-07-31 17:39:09.264', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14514', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco3-f6fcf091959497c2a77967b732d0e631.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'de2c9e3c4a700e3816d4140b8319cce0', 'MD5', '', '', '2013-07-31 17:39:11.085', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '13424', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-6f632bd1cc2772bdcc43bafdbb9d8669.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '709eee7f02ff1f12a9084b906ee0770e', 'MD5', '', '', '2013-07-31 17:41:34.387', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14230', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-261585355b62129e038fabdacc1cd9fa.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eb0b66914142de3e6b2ed949f87096de', 'MD5', '', '', '2013-07-31 17:41:36.253', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14472', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-e2fab857d20b994edb1ad65069407423.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '14b343527abc4892fb3b7e50b0b4b096', 'MD5', '', '', '2013-07-31 17:41:38.243', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14514', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-f6fcf091959497c2a77967b732d0e631.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'de2c9e3c4a700e3816d4140b8319cce0', 'MD5', '', '', '2013-07-31 17:41:40.2', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '13424', false, false, -1, NULL, NULL); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('pisco-test-774d0eb40bb051046a5469be7d912d30.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '1842c6ce6c398afe62f15a01063b39a9', 'MD5', '', '', '2013-07-31 17:41:42.331', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '17211', false, false, -1, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: sysMetaStatusList statement is: prep3: SELECT guid, serial_version, date_modified, archived FROM systemmetadata ORDER BY guid; [org.dataone.cn.dao.SystemMetadataDaoMetacatImpl]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO identifier VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', '6f632bd1cc2772bdcc43bafdbb9d8669.1', 1);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO systemmetadata VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', NULL, '1', '2013-07-31 17:00:00', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', '709eee7f02ff1f12a9084b906ee0770e', 'MD5', 'urn:node:testSource', 'urn:node:testSource', '2013-07-31 15:29:44.429', 'uid=cjones,o=NCEAS,dc=ecoinformatics,dc=org', 'eml://ecoinformatics.org/eml-2.0.1', '14230', false, false, 1, '6f632bd1cc2772bdcc43bafdbb9d8669.1.0', '6f632bd1cc2772bdcc43bafdbb9d8669.1.2');] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO xml_access VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', NULL, 'public', 4, 'allow', 'allowFirst', NULL, NULL, NULL, NULL, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO xml_access VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', NULL, 'testSubject', 7, 'allow', 'allowFirst', NULL, NULL, NULL, NULL, NULL, NULL);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationpolicy VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', 'urn:node:testNode2', 'preferred');] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationpolicy VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', 'urn:node:testNode4', 'preferred');] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationpolicy VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1', 'urn:node:testNode3', 'blocked');] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1','urn:node:testNode2','COMPLETED','2013-08-05 16:40:00.000');] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('6f632bd1cc2772bdcc43bafdbb9d8669.1.1','urn:node:testNode4','QUEUED','2013-08-05 16:25:00.000');] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:34: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:34: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testGetSystemMetadata(SystemMetadataDaoMetacatImplTest.java:90)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [testId]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [testId]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [foo]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [foo]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL query [SELECT count(guid) FROM systemmetadata] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:114)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:114)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:114)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:114)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [testCompPid]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [testCompPid]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.2]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.2]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL query [SELECT count(guid) FROM systemmetadata] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [testCompPid]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [testCompPid]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.2]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.2]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noisePid.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [simple.test-id]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [simple.test-id]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.99]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.99]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [noise.3]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [foo]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [foo]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL query [SELECT count(guid) FROM systemmetadata] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testSimpleAndComplexSaveSystemMetadata(SystemMetadataDaoMetacatImplTest.java:168)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:336)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.ObjectFormatIdentifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 52 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [pid1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO systemmetadata (guid) VALUES (?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [pid1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 0 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.saveSystemMetadata(SystemMetadataDaoMetacatImpl.java:365)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testUniquePidConstraint(SystemMetadataDaoMetacatImplTest.java:180)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Creating new transaction with name [pid1]: PROPAGATION_REQUIRED,ISOLATION_READ_COMMITTED [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Acquired Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] for JDBC transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Changing isolation level of JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to 2 [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Switching JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] to manual commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [UPDATE systemmetadata SET series_id = ?, serial_version = ?, date_uploaded = ?, rights_holder = ?, checksum = ?, checksum_algorithm = ?, origin_member_node = ?, authoritive_member_node = ?, date_modified = ?, submitter = ?, object_format = ?, size = ?, archived = ?, replication_allowed = ?, number_replicas = ?, obsoletes = ?, obsoleted_by = ? WHERE guid = ? ;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationpolicy WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 4 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationpolicy (guid, member_node, policy) VALUES (?, ?, ?);] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM smreplicationstatus WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 3 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO smreplicationstatus (guid, member_node, status, date_verified) VALUES (?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [DELETE FROM xml_access WHERE guid = ?] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 2 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL update [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [INSERT INTO xml_access (guid, principal_name, permission, perm_type, perm_order) VALUES (?, ?, ?, ?, ?)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: SQL update affected 1 rows [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Initiating transaction commit [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Committing JDBC transaction on Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Releasing JDBC Connection [jdbc:h2:mem:db1, UserName=METACAT, H2 JDBC Driver] after transaction [org.springframework.jdbc.datasource.DataSourceTransactionManager]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL query [SELECT count(guid) FROM systemmetadata] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
org.dataone.exceptions.MarshallingException
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:232)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:202)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1315)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl$SystemMetadataMapper.mapRow(SystemMetadataDaoMetacatImpl.java:1143)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:92)
at org.springframework.jdbc.core.RowMapperResultSetExtractor.extractData(RowMapperResultSetExtractor.java:1)
at org.springframework.jdbc.core.JdbcTemplate$1.doInPreparedStatement(JdbcTemplate.java:649)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:587)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:637)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:662)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:702)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:309)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImpl.getSystemMetadata(SystemMetadataDaoMetacatImpl.java:127)
at org.dataone.cn.dao.SystemMetadataDaoMetacatImplTest.testUniquePidConstraint(SystemMetadataDaoMetacatImplTest.java:184)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0]
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:311)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:236)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at org.dataone.service.util.TypeMarshaller.marshalTypeToOutputStream(TypeMarshaller.java:229)
... 44 more
Caused by: com.sun.istack.internal.SAXException2: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:232)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:247)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:355)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:578)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:326)
at com.sun.xml.internal.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:479)
at com.sun.xml.internal.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:308)
... 47 more
Caused by: com.sun.xml.internal.bind.api.AccessorException: Object must have some value in its @XmlValue field: org.dataone.service.types.v1.Identifier@0
at com.sun.xml.internal.bind.v2.model.impl.RuntimeClassInfoImpl$TransducerImpl.writeLeafElement(RuntimeClassInfoImpl.java:395)
at com.sun.xml.internal.bind.v2.runtime.reflect.TransducedAccessor$CompositeTransducedAccessorImpl.writeLeafElement(TransducedAccessor.java:239)
at com.sun.xml.internal.bind.v2.runtime.property.SingleElementLeafProperty.serializeBody(SingleElementLeafProperty.java:115)
at com.sun.xml.internal.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:345)
... 51 more
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS identifier ( guid text NOT NULL, docid character varying(250), rev bigint, CONSTRAINT identifier_pk PRIMARY KEY (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS systemmetadata ( guid text NOT NULL, series_id text, serial_version character varying(256), date_uploaded timestamp, rights_holder character varying(250), checksum character varying(512), checksum_algorithm character varying(250), origin_member_node character varying(250), authoritive_member_node character varying(250), date_modified timestamp, submitter character varying(256), object_format character varying(256), size character varying(256), archived boolean, replication_allowed boolean, number_replicas bigint, obsoletes text, obsoleted_by text, CONSTRAINT systemmetadata_pk PRIMARY KEY (guid));] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS xml_access ( guid text, accessfileid text, principal_name character varying(100), permission bigint, perm_type character varying(32), perm_order character varying(32), begin_time date, end_time date, ticket_count bigint, subtreeid character varying(32), startnodeid bigint, endnodeid bigint, CONSTRAINT xml_access_ck CHECK (begin_time < end_time)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationpolicy ( guid text, member_node character varying(250), policy text, CONSTRAINT smreplicationpolicy_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus ( guid text, member_node character varying(250), status character varying(250), date_verified timestamp, CONSTRAINT smreplicationstatus_fk FOREIGN KEY (guid) REFERENCES systemmetadata (guid)); ] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationpolicy;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS xml_access;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS systemmetadata;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS identifier;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.311 sec
Running org.dataone.cn.dao.ReplicationDaoMetacatImplTest
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','cnDev','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','COMPLETED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getCompletedMemberNodeReplicas statement is: prep253: SELECT DISTINCT guid, date_verified FROM smreplicationstatus WHERE date_verified <= ? AND status = 'COMPLETED' AND member_node <> 'cnDev' ORDER BY date_verified ASC ; {1: TIMESTAMP '2018-10-09 20:29:35.76'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','cnDev','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','COMPLETED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getCompletedCoordinatingNodeReplicas statement is: prep254: SELECT DISTINCT guid, date_verified FROM smreplicationstatus WHERE date_verified <= ? AND status = 'COMPLETED' AND member_node = 'cnDev' ORDER BY date_verified ASC; {1: TIMESTAMP '2018-10-09 20:29:35.768'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','QUEUED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Getting current pending replicas by node. [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getPendingReplicasbyNode statement is: prep255: SELECT member_node, count(status) AS count FROM smreplicationstatus WHERE status = 'REQUESTED' OR status = 'QUEUED' GROUP BY member_node ORDER BY member_node; [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Pending replicas by node result size is 2 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Pending replica map by node: [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Node: mn:test:2, count: 1 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Node: mn:test:1, count: 2 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','QUEUED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:2','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Getting recently failed replicas by node. [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Calendar date is: 2018-10-09 20:29:35 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Cutoff date is: 2018-10-09 19:29:35.778 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: getRecentFailedReplicas statement is: prep256: SELECT member_node, count(status) AS count FROM smreplicationstatus WHERE status = 'FAILED' AND date_verified >= ? GROUP BY member_node ORDER BY member_node; {1: TIMESTAMP '2018-10-09 19:29:35.778'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Failed replicas by node result size is 0 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Recent failed replica map by node: [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Getting recently completed replicas by node. [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Calendar date is: 2018-10-09 20:29:35 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Cutoff date is: 2018-10-09 19:29:35.781 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: getRecentCompletedReplicas statement is: prep257: SELECT member_node, count(status) AS count FROM smreplicationstatus WHERE status = 'COMPLETED' AND date_verified >= ? GROUP BY member_node ORDER BY member_node; {1: TIMESTAMP '2018-10-09 19:29:35.781'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Recent completed replicas by node result size is 0 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Recent completed replica map by node: [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Getting current entry counts by node status. [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getCountsByNodeStatus statement is: prep258: SELECT member_node, status, count(status) AS count FROM smreplicationstatus GROUP BY member_node, status ORDER BY member_node, status; [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Counts by node-status result size is 3 [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:3','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getRequestedReplicasByDate statement is: prep259: SELECT guid, member_node, status, date_verified FROM smreplicationstatus WHERE date_verified <= ? AND status = 'REQUESTED' ORDER BY date_verified ASC; {1: TIMESTAMP '2018-10-09 20:29:35.788'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:3','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getRequestedReplicasByDate statement is: prep260: SELECT count(*) FROM smreplicationstatus WHERE member_node = ? AND status = 'REQUESTED'; {1: 'mn:test:1'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid4','mn:test:1','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid5','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid6','mn:test:3','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getMemberNodesWithQueuedReplica statement is: prep261: SELECT DISTINCT member_node FROM smreplicationstatus WHERE status='QUEUED'; [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid7','mn:test:3','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid4','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid5','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid6','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid4','mn:test:1','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid5','mn:test:3','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid6','mn:test:4','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:4','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicaCountByNode statement is: prep262: SELECT count(*) FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED'; {1: 'mn:test:33'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicaCountByNode statement is: prep263: SELECT count(*) FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED'; {1: 'mn:test:1'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicaCountByNode statement is: prep264: SELECT count(*) FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED'; {1: 'mn:test:2'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicaCountByNode statement is: prep265: SELECT count(*) FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED'; {1: 'mn:test:3'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicaCountByNode statement is: prep266: SELECT count(*) FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED'; {1: 'mn:test:4'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid7','mn:test:3','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid4','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid5','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid6','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:1','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid4','mn:test:1','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid5','mn:test:3','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid6','mn:test:4','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:4','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicasByDate statement is: prep267: SELECT guid, member_node, status, date_verified FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED' ORDER BY date_verified ASC; {1: 'mn:test:1'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicasByDate statement is: prep268: SELECT guid, member_node, status, date_verified FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED' ORDER BY date_verified ASC; {1: 'mn:test:2'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicasByDate statement is: prep269: SELECT guid, member_node, status, date_verified FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED' ORDER BY date_verified ASC; {1: 'mn:test:3'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicasByDate statement is: prep270: SELECT guid, member_node, status, date_verified FROM smreplicationstatus WHERE member_node = ? AND status = 'QUEUED' ORDER BY date_verified ASC; {1: 'mn:test:4'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [CREATE TABLE IF NOT EXISTS smreplicationstatus (guid text, member_node varchar(250), status varchar(250), date_verified timestamp)] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid','mn:test:1','COMPLETED',TIMESTAMP '2011-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid2','mn:test:2','REQUESTED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid7','mn:test:3','REQUESTED',TIMESTAMP '2020-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid3','mn:test:2','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [INSERT INTO smreplicationstatus VALUES ('test_guid4','mn:test:3','QUEUED',TIMESTAMP '2012-01-01 12:00:00')] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicasByDate statement is: prep271: SELECT count(*) FROM smreplicationstatus WHERE guid = ? AND member_node = ? AND status = 'QUEUED' {1: 'nosuch', 2: 'mn:test:2'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicasByDate statement is: prep272: SELECT count(*) FROM smreplicationstatus WHERE guid = ? AND member_node = ? AND status = 'QUEUED' {1: 'test_guid3', 2: 'mn:test:2'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing prepared SQL query [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Executing prepared SQL statement [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: getQueuedReplicasByDate statement is: prep273: SELECT count(*) FROM smreplicationstatus WHERE guid = ? AND member_node = ? AND status = 'QUEUED' {1: 'test_guid4', 2: 'mn:test:3'} [org.dataone.cn.dao.ReplicationDaoMetacatImpl]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Executing SQL statement [DROP TABLE IF EXISTS smreplicationstatus;] [org.springframework.jdbc.core.JdbcTemplate]
20181009-20:29:35: [DEBUG]: Fetching JDBC Connection from DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
20181009-20:29:35: [DEBUG]: Returning JDBC Connection to DataSource [org.springframework.jdbc.datasource.DataSourceUtils]
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.091 sec
Running org.dataone.cn.log.MetricLogEntryTest
{"event":"synchronization queued","threadName":"main","threadId":1,"dateLogged":"2018-10-09T20:29:35.843+00:00"}
20181009-20:29:35: [INFO]: {"event":"synchronization queued","threadName":"main","threadId":1,"dateLogged":"2018-10-09T20:29:35.843+00:00"} [org.dataone.cn.log.MetricLogEntryTest]
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec
Results :
Tests run: 36, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[WARNING] Attempt to (de-)serialize anonymous class hudson.maven.reporters.SurefireArchiver$2; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
[WARNING] Attempt to (de-)serialize anonymous class hudson.maven.reporters.BuildInfoRecorder$1; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
[INFO]
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[INFO] Building jar: /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/d1_cn_common-2.4.0-SNAPSHOT.jar
[INFO]
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[INFO] Building jar: /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/d1_cn_common-2.4.0-SNAPSHOT-tests.jar
[INFO]
[INFO] --- maven-install-plugin:2.3:install (default-install) @ d1_cn_common ---
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[INFO] Installing /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/target/d1_cn_common-2.4.0-SNAPSHOT-tests.jar to /var/lib/jenkins/.m2/repository/org/dataone/d1_cn_common/2.4.0-SNAPSHOT/d1_cn_common-2.4.0-SNAPSHOT-tests.jar
[INFO]
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ d1_cn_common ---
[INFO] Executing: /bin/sh -c cd '/var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common' && 'svn' '--non-interactive' 'info'
[INFO] Working directory: /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common
[INFO] Storing buildNumber: 19369 at timestamp: 1539116978361
[INFO] Executing: /bin/sh -c cd '/var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common' && 'svn' '--non-interactive' 'info'
[INFO] Working directory: /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common
[INFO] Storing buildScmBranch: trunk
[WARNING] Failed to getClass for org.apache.maven.plugin.javadoc.JavadocReport
[INFO]
[INFO] --- maven-javadoc-plugin:2.10.4:javadoc (default-cli) @ d1_cn_common ---
[INFO]
Loading source files for package org.dataone.cn.batch.exceptions...
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Constructing Javadoc information...
Standard Doclet version 1.8.0_111
Building tree for all the packages and classes...
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30 warnings
[WARNING] Javadoc Warnings
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/batch/exceptions/ExecutionDisabledException.java:34: warning - @param argument "cause" is not a parameter name.
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[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/hazelcast/HazelcastClientFactory.java:103: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/hazelcast/HazelcastClientFactory.java:130: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/hazelcast/HazelcastInstanceFactory.java:44: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/model/repository/D1BaseJpaRepositoryConfiguration.java:24: warning - @Configuration is an unknown tag.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/model/repository/D1BaseJpaRepositoryConfiguration.java:24: warning - @EnableJpaRepositories("repository is an unknown tag.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/model/repository/D1BaseJpaRepositoryConfiguration.java:24: warning - @ComponentScan("model is an unknown tag.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:80: warning - Tag @see:illegal character: "58" in "http://www.ietf.org/rfc/rfc2254.txt for considerations on special characters"
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:80: warning - Tag @see:illegal character: "47" in "http://www.ietf.org/rfc/rfc2254.txt for considerations on special characters"
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:80: warning - Tag @see:illegal character: "47" in "http://www.ietf.org/rfc/rfc2254.txt for considerations on special characters"
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:80: warning - Tag @see:illegal character: "47" in "http://www.ietf.org/rfc/rfc2254.txt for considerations on special characters"
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:80: warning - Tag @see:illegal character: "47" in "http://www.ietf.org/rfc/rfc2254.txt for considerations on special characters"
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:80: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:367: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:80: warning - Tag @see: reference not found: http://www.ietf.org/rfc/rfc2254.txt for considerations on special characters
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:247: warning - @param argument "dn:" is not a parameter name.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:277: warning - @param argument "dn:" is not a parameter name.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/ldap/LDAPService.java:307: warning - @param argument "dn:" is not a parameter name.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/ReplicationDao.java:89: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDao.java:41: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDao.java:50: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDao.java:65: warning - @param argument "tableMap" is not a parameter name.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDaoMetacatImpl.java:348: warning - Tag @see: can't find saveSystemMetadata(org.dataone.service.types.v1.SystemMetadata) in org.dataone.cn.dao.SystemMetadataDao
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDaoMetacatImpl.java:410: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDaoMetacatImpl.java:640: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDaoMetacatImpl.java:754: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDaoMetacatImpl.java:787: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDaoMetacatImpl.java:815: warning - @return tag has no arguments.
[WARNING] /var/lib/jenkins/jobs/d1_cn_common/workspace/d1_cn_common/src/main/java/org/dataone/cn/dao/SystemMetadataDaoMetacatImpl.java:1352: warning - @return tag has no arguments.
[JENKINS] Archiving javadoc
[WARNING] Attempt to (de-)serialize anonymous class hudson.FilePath$32; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
[WARNING] Attempt to (de-)serialize anonymous class hudson.maven.reporters.MavenArtifactArchiver$2; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
[WARNING] Attempt to (de-)serialize anonymous class hudson.maven.reporters.MavenFingerprinter$1; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
Notifying upstream projects of job completion
Join notifier requires a CauseAction
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 23.595s
[INFO] Finished at: Tue Oct 09 20:29:41 UTC 2018
[INFO] Final Memory: 56M/577M
[INFO] ------------------------------------------------------------------------
Waiting for Jenkins to finish collecting data
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