3/ Z        ) ) ) ) )                              !"#$ =%&'( A% )*+, F-. / J0123 M /%4 56 78 59 : ;< ;=>?@ Y ABC ^DE ^F ^ ^GHIJ )KLMNOP jQ RS TU VWXY Z [\] ^_ `abc ~%d %e fgh ijk % lmn opqr s tuvwxyz { |}~   )  ) )          F             %          F%          % " T#            )    4 4  )  A @% @ / I ! " #$%& ' ( )*+,-./012 )345 )67 89:;<=> ?@ )AB C D )E FGHIJK L )M NOPQ R )S TU VWXY Z[J\]^_` abc d e f ghi )jklmnop )q rs rtuvwxyz{|}~         4 4 4 g          4  % %    )     A0 @0     " " "   "   1   6 8 1 6 = = B%P       7       DELETEDMESSAGELjava/lang/String; ConstantValue logMetacatLorg/apache/log4j/Logger;request'Ljavax/servlet/http/HttpServletRequest;handler'Ledu/ucsb/nceas/metacat/MetacatHandler;MAXIMUM_DB_RECORD_COUNTIsession2&Lorg/dataone/service/types/v1/Session;*(Ljavax/servlet/http/HttpServletRequest;)VCodeLineNumberTableLocalVariableTablethis.Ledu/ucsb/nceas/metacat/dataone/D1NodeService; getSession(()Lorg/dataone/service/types/v1/Session; setSession)(Lorg/dataone/service/types/v1/Session;)Vsession getCNNodeList)()Lorg/dataone/service/types/v2/NodeList;cnLorg/dataone/client/v2/CNode; Exceptions describe(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;)Lorg/dataone/service/types/v1/DescribeResponse;id)Lorg/dataone/service/types/v1/Identifier;sysmeta-Lorg/dataone/service/types/v2/SystemMetadata;describeResponse/Lorg/dataone/service/types/v1/DescribeResponse;deletef(Ljava/lang/String;Lorg/dataone/service/types/v1/Identifier;)Lorg/dataone/service/types/v1/Identifier;eeLjava/lang/Exception;sysMetareLjava/lang/RuntimeException;lock!Ljava/util/concurrent/locks/Lock;e1Ledu/ucsb/nceas/metacat/McdbDocNotFoundException;Ljava/sql/SQLException;:Ledu/ucsb/nceas/metacat/client/InsufficientKarmaException;usernamepidlocalId StackMapTable! ""&.ping()Ljava/util/Date;sf/Lorg/dataone/service/exceptions/ServiceFailure; serialNumberdbConn.Ledu/ucsb/nceas/metacat/database/DBConnection;#$create(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Ljava/io/InputStream;Lorg/dataone/service/types/v2/SystemMetadata;)Lorg/dataone/service/types/v1/Identifier;formatIdmsgLjava/io/IOException;6Lorg/dataone/service/exceptions/InvalidSystemMetadata;.Lorg/dataone/service/exceptions/NotAuthorized;4Ledu/ucsb/nceas/utilities/PropertyNotFoundException;objectLjava/io/InputStream; resultPidsubject&Lorg/dataone/service/types/v1/Subject; publicSubjectisScienceMetadataZC%&_L1k' objectExists,(Lorg/dataone/service/types/v1/Identifier;)VidExistsremoveSystemMetaAndIdentifierremoveSolrIndex0(Lorg/dataone/service/types/v2/SystemMetadata;)V getLogRecords(Lorg/dataone/service/types/v1/Session;Ljava/util/Date;Ljava/util/Date;Ljava/lang/String;Ljava/lang/String;Ljava/lang/Integer;Ljava/lang/Integer;)Lorg/dataone/service/types/v2/Log;exserviceFailureCodeheadPidfromDateLjava/util/Date;toDateevent pidFilterstartLjava/lang/Integer;countauthDel-Ledu/ucsb/nceas/metacat/dataone/D1AuthHelper;log"Lorg/dataone/service/types/v2/Log;im*Ledu/ucsb/nceas/metacat/IdentifierManager;el!Ledu/ucsb/nceas/metacat/EventLog; filterDocid[Ljava/lang/String;()getf(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;)Ljava/io/InputStream;/Lorg/dataone/service/exceptions/InvalidRequest;errorde notFoundCodeheadPID inputStreamallowed principalgetSystemMetadata~(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;)Lorg/dataone/service/types/v2/SystemMetadata;notAuthorizedCodeinvalidTokenCodeneedDeleteInfo HeadOfSid isAuthorized{(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v1/Permission;)Z permission)Lorg/dataone/service/types/v1/Permission;invalidRequestCode*getLogEntryField8(Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String; fieldnameentrybeginends0(Lorg/dataone/service/types/v2/SystemMetadata;)Z)Lorg/dataone/service/exceptions/NotFound; objectFormat+Lorg/dataone/service/types/v2/ObjectFormat;++isValidIdentifier,(Lorg/dataone/service/types/v1/Identifier;)ZchCivalidinsertOrUpdateDocument(Ljava/io/InputStream;Ljava/lang/String;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v1/Session;Ljava/lang/String;Ljava/lang/String;Lorg/dataone/service/types/v1/Checksum;)Ljava/lang/String;docidrevSreviterLjava/util/Iterator; otherSubjectsLjava/util/Set; detailCode xmlStreamencodinginsertOrUpdatechecksum'Lorg/dataone/service/types/v1/Checksum;xmlBytes[BxmlStrparamsLjava/util/Hashtable;actiondoctext groupnamesresultLocalVariableTypeTable;7Ljava/util/Set;;,-.insertDataObject(Ljava/io/InputStream;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Checksum;)Ljava/lang/String;1Ledu/ucsb/nceas/metacat/AccessionNumberException; dataDirectoryLjava/io/File;newFile inWhitelist datafilepathlocked insertSystemMetadata listObjects!(Lorg/dataone/service/types/v1/Session;Ljava/util/Date;Ljava/util/Date;Lorg/dataone/service/types/v1/ObjectFormatIdentifier;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v1/NodeReference;Ljava/lang/Integer;Ljava/lang/Integer;)Lorg/dataone/service/types/v1/ObjectList;isSid startTimeendTimeobjectFormatId5Lorg/dataone/service/types/v1/ObjectFormatIdentifier; identifiernodeId,Lorg/dataone/service/types/v1/NodeReference; objectList)Lorg/dataone/service/types/v1/ObjectList;/01updateSystemMetadataneedUpdateModificationDateupdateSystemMetadataWithoutLock1(Lorg/dataone/service/types/v2/SystemMetadata;Z)V(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v2/SystemMetadata;ZLorg/dataone/service/types/v2/SystemMetadata;Z)ZnewSid obsoletes obsoletedBy currentSid logArchivecurrentSysmetafromCNcheckModifiedImmutableFields](Lorg/dataone/service/types/v2/SystemMetadata;Lorg/dataone/service/types/v2/SystemMetadata;)VorgMetanewMeta"checkOneTimeSettableSysmMetaFieldscheckCircularObsoletesChainpidListLjava/util/Vector; obsoletesSymsys=Ljava/util/Vector;checkCircularObsoletedByChainobsoletedBySymexpandPermissions;(Lorg/dataone/service/types/v1/Permission;)Ljava/util/List;expandedPermissionsLjava/util/List;;Ljava/util/List;2 Signaturef(Lorg/dataone/service/types/v1/Permission;)Ljava/util/List;writeStreamToFile(Ljava/io/File;Ljava/lang/String;Ljava/io/InputStream;Lorg/dataone/service/types/v1/Checksum;Lorg/dataone/service/types/v1/Identifier;)Ljava/io/File;success checksumValue algorithmmdLjava/security/MessageDigest;os"Ljava/security/DigestOutputStream;lengthJ localChecksumLjava/io/FileNotFoundException;(Ljava/security/NoSuchAlgorithmException;dirfileName dataStream3listNodesBySubject_(Lorg/dataone/service/types/v1/Subject;Lorg/dataone/service/types/v2/NodeList;)Ljava/util/List; nodeSubject nodeSubjectsnode#Lorg/dataone/service/types/v2/Node;nodelist'Lorg/dataone/service/types/v2/NodeList;nodeListnodes8Ljava/util/List;5Ljava/util/List;(Lorg/dataone/service/types/v1/Subject;Lorg/dataone/service/types/v2/NodeList;)Ljava/util/List; archiveObject(ZLorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v2/SystemMetadata;Z)Lorg/dataone/service/types/v1/Identifier; ignoreRevacc(Ledu/ucsb/nceas/metacat/AccessionNumber;needModifyDatearchiveCNObject(ZLorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v2/SystemMetadata;Z)VcheckV1SystemMetaPidExistt(Lorg/dataone/service/types/v1/Identifier;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)VexistsIndentifierTableserviceFailureMessage noFoundCodenotFoundMessageexists getPIDForSIDf(Lorg/dataone/service/types/v1/Identifier;Ljava/lang/String;)Lorg/dataone/service/types/v1/Identifier;sqlesidgetSystemMetadataForPID(Lorg/dataone/service/types/v1/Identifier;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Z)Lorg/dataone/service/types/v2/SystemMetadata;existsInIdentifierTable!checkSidInModifyingSystemMetadataT(Lorg/dataone/service/types/v2/SystemMetadata;Ljava/lang/String;Ljava/lang/String;)Z obsoletesSidobsoletesSysmetaobsoletedBySidobsoletedBySysmetainvalidSystemMetadataCodepass listViewsQ(Lorg/dataone/service/types/v1/Session;)Lorg/dataone/service/types/v2/OptionList;skinNamearg0views)Lorg/dataone/service/types/v2/OptionList; skinNames&Ljava/util/Vector;+()Lorg/dataone/service/types/v2/OptionList;viewx(Lorg/dataone/service/types/v1/Session;Ljava/lang/String;Lorg/dataone/service/types/v1/Identifier;)Ljava/io/InputStream; transformer$Ledu/ucsb/nceas/metacat/DBTransform;documentContent sourceType targetTypebaosLjava/io/ByteArrayOutputStream;writerLjava/io/Writer;"Ljava/lang/ClassNotFoundException;formatresultInputStream4existsInObsoletes=(Lorg/dataone/service/types/v1/Identifier;)Ljava/lang/String;guidexistsInObsoletedByexistsInFieldsO(Ljava/lang/String;Lorg/dataone/service/types/v1/Identifier;)Ljava/lang/String;columnsqlstmtLjava/sql/PreparedStatement;Ljava/sql/ResultSet;56()V SourceFileD1NodeService.java h `a fg7 89 ^_getCNNodeList - got CN instance: ;<= >u -org/dataone/service/types/v1/DescribeResponse ?@ AB C DE FB hG HI JI KL-org/dataone/service/exceptions/ServiceFailure1350$The provided identifier was invalid. hM( NO PQ/edu/ucsb/nceas/metacat/McdbDocNotFoundExceptionjava/lang/StringBuilderFD1NodeService.delete - the object itself with the provided identifier RS` doesn't exist in the system. But we will continute to delete the system metadata of the object. TI U<V NW XY! Locked identifier Z[\ ]+org/dataone/service/types/v2/SystemMetadata ^] _`a ^Lb Nc dejava/lang/Exception?D1NodeService.delete - the object with the provided identifier 5 was deleted. But the MN solr index can't be deleted.) Nfg hI User-Agent iQj kl mI nCouldn't delete the object -. Couldn't obtain the system metadata record. oUnlocked identifier java/lang/RuntimeExceptionCouldn't delete . The error message was: pIjava/sql/SQLException(The object with the provided identifier  couldn't be identified since q r'org/dataone/service/exceptions/NotFound1340?There was a problem deleting the object.The error message was: 8edu/ucsb/nceas/metacat/client/InsufficientKarmaException st u,org/dataone/service/exceptions/NotAuthorized1320TThe provided identity does not have permission to DELETE objects on the Member Node.MNodeService.pingv wx# yz {| }~ N +org/dataone/service/exceptions/InvalidToken4894)Session is required to WRITE to the Node.% $org/dataone/service/types/v1/Subject"org/dataone/service/util/Constantspublic 1100DThe provided identity does not have permission to WRITE to the Node.Comparing pid|sysmeta_pid: | 4org/dataone/service/exceptions/InvalidSystemMetadata11808The supplied system metadata is invalid. The identifier ? does not match identifierin the system metadata identified by .eD1NodeService.create - the checksum object from the system metadata shouldn't be null for the object <?The checksum object from the system metadata shouldn't be null. ?D1Node.create - There was problem to save the system metadata: 1190/There was problem to save the system metadata:  since 0UTF-8insert java/io/IOException (The Node is unable to create the object 1 There was a problem converting the object to XML: ;D1NodeService.create - the node couldn't create the object )The node is unable to create the object: /0(The node is unable to create the object Done inserting new object: )The Node is unable to create the object. 2edu/ucsb/nceas/utilities/PropertyNotFoundException &Couldn't create solr index for object create() complete for object: <2org/dataone/service/exceptions/IdentifierNotUnique1120'The requested identifier can't be null.Checking if identifier exists: The requested identifier 0 couldn't be determined if it is unique since :  is already used by another object and therefore can not be used for this object. Clients should choosea new identifier that is unique and retry the operation or use CN.reserveIdentifier() to reserve one.?D1NodeService.removeSystemMeta - the system metadata of object P will removed from both hazelcast and db tables since the object creation failedT has been removed from both hazelcast and db tables since the object creation failed  M0D1NodeService.removeSystemMeta - the identifier  and local id M have been removed from the identifier table since the object creation failedHD1NodeService.removeSysteMeta - can't decide if the mapping of the pid  exists on the identifier table.      $Can't remove the solr index for pid +edu/ucsb/nceas/metacat/dataone/D1AuthHelper14601490 h r org/dataone/service/types/v2/Logsetting fromdate from nulljava/util/Date hsetting todate from null  z de'org/dataone/service/types/v1/Identifier java/lang/String,Could not find localId for given pidFilter '' U fromDate: RtoDate: java/sql/Timestamp  10301020The object specified by  does not exist at this node.+ couldn't be identified at this node since *  -org/dataone/service/exceptions/InvalidRequest I   ,edu/ucsb/nceas/metacat/dataone/D1NodeService7The object with the PID has been deleted from the node.Can't determine if the pid  is deleted or not. does not exist at this node. % could not be returned due to error: . read1090142010401050  1761)Permission was not provided or is invalid176018001820 <>update1310MD1NodeService.insertOrUpdateDocument - Error inserting or updating document: &Error inserting or updating document: VD1NodeService.insertOrUpdateDocument - Finsished inserting xml document with local id  and its pid is  SCould not determinte if the user is allowed to upload data objects to this Metacat:uD1NodeService.insertDataObject Could not determinte if the user is allowed to upload data objects to this Metacat: - 7D1NodeService.insertDataObject - The provided identity / does not have permission to WRITE to the Node.The provided identity  Generating a pid/localId mappingapplication.datafilepath QLookup data file path  Could not lock file for writing:%Case DATA: starting to write to disk. java/io/File t lmRegistering document...BIN Registration step completed.SQLE:   uRegistration failed: /edu/ucsb/nceas/metacat/AccessionNumberExceptionANE:  Exception: Logging the creation event.Scheduling replication.:edu/ucsb/nceas/metacat/replication/ForceReplicationHandler h$Starting to insert SystemMetadata...1Inserting new system metadata with modified date  1580 Error querying system metadata: ,D1NodeService.updateSystemMetadata() called. < LM o<48627D1NodeService.updateSystemMetadataWithoutLock() called.OD1NodeService.updateSystemMetadataWithoutLock() - update the modification date.48637The identifier in the system metadata shouldn't be nullThe identifier in method call (0) does not match identifier in system metadata ().(The current dateUploaded is ============ /the dateUploaded in the new system metadata is oD1NodeService.updateSystemMetadata: Currently there is no system metadata in this node associated with the pid ]In the branch that the sid is not null in the current system metadata and the current sid is  4869?The series id in the system metadata is invalid in the request.The series id 6 in the system metadata doesn't match the current sid 49564868 ^The formatId field is requried and shouldn't be null on the new system metadata of the object bThe rightsHolder field is requried and shouldn't be null on the new system metadata of the object VW ZW  There is an object with id  already obsoletes the pid . You can't set the object  to obsolete the pid  again. [  ! already is obsoleted by the pid . You can't set the pid  to be obsoleted by the pid b  t/D1Node.update - this is to archive a cn object Can't find the pid  for archive./D1Node.update - this is to archive a MN object @D1Node.update - regularly update the system metadata of the pid QCould not log 'updateSystemMetadata' event because no localId was found for pid: cCould not log 'updateSystemMetadata' event because the localId couldn't be identified for the pid: 7in the start of the checkModifiedImmutableFields method[in the checkModifiedImmutableFields method when the org and new system metadata is not nullNThe new version of the system metadata is invalid since the identifier is nullgThe request is trying to modify an immutable field in the SystemMeta: the new system meta's identifier ! is different to the orginal one HThe new version of the system metadata is invalid since the size is nullaThe request is trying to modify an immutable field in the SystemMeta: the new system meta's size  R,eThe request is trying to modify an immutable field in the SystemMeta: the new system meta's checksum The request is trying to modify an immutable field in the SystemMeta: the new system meta's checksum is null and it is different to the orginal one lin the checkModifiedImmutableFields method and orgMeta.getSubmitter is not null and the orginal submiter is in the checkModifiedImmutableFields method and newMeta.getSubmitter is not null and the submiter in the new system metadata is fThe request is trying to modify an immutable field in the SystemMeta: the new system meta's submitter The request is trying to modify an immutable field in the SystemMeta: the new system meta's submitter is null and it is different to the orginal one mThe request is trying to modify an immutable field in the SystemMeta: the new system meta's date of uploaded The request is trying to modify an immutable field in the SystemMeta: the new system meta's date of uploaded is null and it is different to the orginal one 1qThe request is trying to modify an immutable field in the SystemMeta: the new system meta's orginal member node The request is trying to modify an immutable field in the SystemMeta: the new system meta's orginal member node is null and it is different to the orginal one gThe request is trying to modify an immutable field in the SystemMeta: the new system meta's series id The request is trying to modify an immutable field in the SystemMeta: the new system meta's series id is null and it is different to the orginal one ZThe request is trying to reset the obsoletedBy field in the System Metadata of the Object \. This is illegal since the obsoletedBy field is already set and cannot be changed once set.XThe request is trying to reset the obsoletes field in the System Metadata of the Object Z. This is illegal since the obsoletes field is already set and cannot be changed once set.7D1NodeService.checkCircularObsoletesChain - the object  obsoletes MThe obsoletes field and identifier of the system metadata has the same value 2. This creates a circular chain and it is illegal.java/util/Vector L L_D1NodeService.checkCircularObsoletesChain - when Metacat updated the system metadata of object %, it found the obsoletes field value D in its new system metadata creating a circular chain at the object . This is illegal3When Metacat updated the system metadata of object 9D1NodeService.checkCircularObsoletedByChain - the object  is obsoletedBy OThe obsoletedBy field and identifier of the system metadata has the same value aD1NodeService.checkCircularObsoletedByChain - When Metacat updated the system metadata of object ', it found the obsoletedBy field value java/util/ArrayList2   hFilename for write is: I for the data object pid tQD1NodeService.writeStreamToFile - the checksum value from the system metadata is  for the data object }D1NodeService.writeStreamToFile - the checksum value from the system metadata shouldn't be null or blank for the data object GThe checksum value from the system metadata shouldn't be null or blank. IfD1NodeService.writeStreamToFile - the algorithm to calculate the checksum from the system metadata is D1NodeService.writeStreamToFile - the algorithm to calculate the checksum from the system metadata shouldn't be null or blank for the data object \The algorithm to calculate the checksum from the system metadata shouldn't be null or blank.3 N java/security/DigestOutputStreamjava/io/FileOutputStream h h     XD1NodeService.writeStreamToFile - the check sum calculated from the saved local file is :. But it doesn't match the value from the system metadata  for the object tdelete the file  sucessfully? R5The checksum calculated from the saved local file is -File creation failed, or file already exists.File already exists: java/io/FileNotFoundExceptionFNF: File not found:  IOE: File was not written: &java/security/NoSuchAlgorithmExceptionGD1NodeService.writeStreamToFile - no such checksum algorithm exception No such checksum algorithm:    !org/dataone/service/types/v2/Node   1330No session has been provided2911,There is no system metadata associated with 6The object with the provided identifier was not found.  ?D1NodeService.archiveObject - can't log the delete event since &edu/ucsb/nceas/metacat/AccessionNumberNOACTION  I I The provided identifier  is invalid@There was a problem archiving the object.The error message was: FThe provided identity does not have permission to archive this object.4972Couldn't archive the object Couldn't archive K. The local id of the object with the identifier can't be identified since  /Couldn't determine if the not-found identifier  was deleted since +The PID couldn't be identified for the sid L java/lang/CharSequence 2The passed-in Identifier cannot be null or blank!!?An error occurred while getting system metadata for identifier "Can't get the system metadata for 1No system metadata could be found for given PID: Couldn't determine if the pid 5 exists in the identifier table. We assume it doesn't+The system metadata is null in the request.9The pid in the system metadata is invalid in the request.A in the system metadata shouldn't have the same value of the pid.\D1NodeService.checkSidInModifyingSystemMetacat - Can't find the system metadata for the pid C which is the value of the obsoletes. So we can't check if the sid  is legitimate E which is the value of the obsoletedBy. So we can't check if the sid  is legitimate.y in the system metadata exists in the system. 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