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" # $ % $ & ' ( ) * + , - . / 0 1 2 3 InnerClasses UUID_SCHEMELjava/lang/String; ConstantValue DOI_SCHEME UUID_PREFIX XPATH_EML_ID logMetacatLorg/apache/log4j/Logger;cnLorg/dataone/client/v2/CNode;executor&Ljava/util/concurrent/ExecutorService;needSyncZ getInstanceV(Ljavax/servlet/http/HttpServletRequest;)Ledu/ucsb/nceas/metacat/dataone/MNodeService;CodeLineNumberTableLocalVariableTablerequest'Ljavax/servlet/http/HttpServletRequest;*(Ljavax/servlet/http/HttpServletRequest;)Ve4Ledu/ucsb/nceas/utilities/PropertyNotFoundException;this-Ledu/ucsb/nceas/metacat/dataone/MNodeService; StackMapTable 4deletez(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;)Lorg/dataone/service/types/v1/Identifier;/Lorg/dataone/service/exceptions/InvalidRequest;authDel-Ledu/ucsb/nceas/metacat/dataone/D1AuthHelper;na2.Lorg/dataone/service/exceptions/NotAuthorized;nasession&Lorg/dataone/service/types/v1/Session;id)Lorg/dataone/service/types/v1/Identifier;serviceFailureCode notFoundCodenotAuthorizedCodeinvalidTokenCodeneedDeleteInfo HeadOfSidsysmeta-Lorg/dataone/service/types/v2/SystemMetadata;Q Exceptionsupdate(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Ljava/io/InputStream;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v2/SystemMetadata;)Lorg/dataone/service/types/v1/Identifier;Ljava/sql/SQLException;1Ledu/ucsb/nceas/metacat/McdbDocNotFoundException;ee/Lorg/dataone/service/exceptions/ServiceFailure; previousSidformatIdmsgLjava/io/IOException;Ljava/lang/Exception; startTime3JexistingObsoletedBysidInSysend2end3currentLjava/math/BigInteger;end4end5pidobjectLjava/io/InputStream;newPid startTimesidlocalIdallowedisScienceMetadatasubject&Lorg/dataone/service/types/v1/Subject;idExistsendoriginMemberNode,Lorg/dataone/service/types/v1/NodeReference;nowLjava/util/Date; serialVersion startTime2invalidRequestCodeexistingSysMetaend6 57LT 6removeIdFromIdentifierTable,(Lorg/dataone/service/types/v1/Identifier;)Vcreate(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Ljava/io/InputStream;Lorg/dataone/service/types/v2/SystemMetadata;)Lorg/dataone/service/types/v1/Identifier;)Lorg/dataone/service/exceptions/NotFound;sf resultPid replicate(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v2/SystemMetadata;Lorg/dataone/service/types/v1/NodeReference;)Ze1serviceFailuremNodeV1Lorg/dataone/client/v1/MNode;mnLorg/dataone/client/v2/MNode;checker5Ledu/ucsb/nceas/metacat/dataone/D1NodeVersionChecker; 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listObjects(Lorg/dataone/service/types/v1/Session;Ljava/util/Date;Ljava/util/Date;Lorg/dataone/service/types/v1/ObjectFormatIdentifier;Lorg/dataone/service/types/v1/Identifier;Ljava/lang/Boolean;Ljava/lang/Integer;Ljava/lang/Integer;)Lorg/dataone/service/types/v1/ObjectList; currentNodeIdendTimeobjectFormatId5Lorg/dataone/service/types/v1/ObjectFormatIdentifier; identifier replicaStatusLjava/lang/Boolean;startLjava/lang/Integer;count : ;getCapabilities%()Lorg/dataone/service/types/v2/Node;pingDate availablesMNCoreiIsMNReadsMNAuthorization sMNStoragesMNReplication sMNPakcagesMNQuerysMNView serviceNamecanPing#Lorg/dataone/service/types/v1/Ping;scontactsynchronization.Lorg/dataone/service/types/v1/Synchronization;schedule'Lorg/dataone/service/types/v1/Schedule;pnfenodeNamecontactSubjectnodeDescnodeTypeStringnodeType'Lorg/dataone/service/types/v1/NodeType;mnCoreServiceVersionsmnReadServiceVersionsmnAuthorizationServiceVersionsmnStorageServiceVersionsmnReplicationServiceVersionsmnPackageServiceVersionsmnQueryServiceVersionsmnViewServiceVersionsnodeSynchronize nodeReplicatemnCoreServiceAvailablesmnReadServiceAvailables mnAuthorizationServiceAvailablesmnStorageServiceAvailablesmnReplicationServiceAvailablesmnPackageServiceAvailablesmnQueryServiceAvailablesmnViewServiceAvailables$Ljava/util/List; < synchronizationFailed_(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/exceptions/SynchronizationFailed;)Z syncFailed6Lorg/dataone/service/exceptions/SynchronizationFailed; principal = getReplicatargetNodeSubjectsystemMetadataChangedc(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;JLjava/util/Date;)ZdateSysMetaLastModifiedneedCheckAuthoriativeNoded(ZLorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;JLjava/util/Date;)ZLjava/lang/RuntimeException;sql currentSIDreplicas logArchiveneedUpdateModificationDatenewSIDcurrentLocalSysMeta newSysMeta8Ljava/util/List;setReplicationStatus(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v1/NodeReference;Lorg/dataone/service/types/v1/ReplicationStatus;Lorg/dataone/service/exceptions/BaseException;)Vstatus0Lorg/dataone/service/types/v1/ReplicationStatus;makePublicIfNot(Lorg/dataone/service/types/v2/SystemMetadata;Lorg/dataone/service/types/v1/Identifier;)Lorg/dataone/service/types/v2/SystemMetadata;policy+Lorg/dataone/service/types/v1/AccessPolicy;isPublic publicSubject publicSession publicRule)Lorg/dataone/service/types/v1/AccessRule;generateIdentifieru(Lorg/dataone/service/types/v1/Session;Ljava/lang/String;Ljava/lang/String;)Lorg/dataone/service/types/v1/Identifier;uuidLjava/util/UUID;#Ledu/ucsb/nceas/ezid/EZIDException; autogenIdschemefragmentgetQueryEngineDescriptionq(Lorg/dataone/service/types/v1/Session;Ljava/lang/String;)Lorg/dataone/service/types/v1_1/QueryEngineDescription;4Ledu/ucsb/nceas/metacat/shared/MetacatUtilException;field+Lorg/dataone/service/types/v1_1/QueryField; fieldNameqed7Lorg/dataone/service/types/v1_1/QueryEngineDescription;pathsForIndexingLjava/util/Vector;engine&Ljava/util/Vector; >listQueryEnginesX(Lorg/dataone/service/types/v1/Session;)Lorg/dataone/service/types/v1_1/QueryEngineList;nameqel0Lorg/dataone/service/types/v1_1/QueryEngineList;enablesquerya(Lorg/dataone/service/types/v1/Session;Ljava/lang/String;Ljava/lang/String;)Ljava/io/InputStream; groupListqueryobj Ledu/ucsb/nceas/metacat/DBQuery;resultsctbaisLLedu/ucsb/nceas/metacat/common/query/stream/ContentTypeByteArrayInputStream;usergroups[Ljava/lang/String;subjectsLjava/util/Set; isMNadmin7Ljava/util/Set; ? postQueryb(Lorg/dataone/service/types/v1/Session;Ljava/lang/String;Ljava/util/HashMap;)Ljava/io/InputStream; solrParams*Lorg/apache/solr/common/params/SolrParams;paramsLjava/util/HashMap;:Ljava/util/HashMap; 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outputStream xmlSourceLjavax/xml/transform/Source; outputTargetLjavax/xml/transform/Result;output*Ljavax/xml/transform/TransformerException; newSysmeta newObject! @ AT lookupOreForb(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Z)Ljava/util/List;foundoreIdrootNodenodeListLorg/w3c/dom/NodeList;guidincludeObsoleteretList B(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Z)Ljava/util/List;a(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;)Ljava/util/List;(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;)Ljava/util/List; getPackage(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/ObjectFormatIdentifier;Lorg/dataone/service/types/v1/Identifier;)Ljava/io/InputStream;format transformer$Ledu/ucsb/nceas/metacat/DBTransform;documentContent sourceType targetTypewriterLjava/io/Writer;Ljava/util/Hashtable;resultInputStreamtmpDirLjava/io/File;htmlFilecssDircssFile pdfFileNamepdfFileoriginalCssPathmetadataStreamfileNameFromMetadataecogridIdentifieridFromMetadatadocidrevdataIdentifierentity.Lorg/ecoinformatics/datamanager/parser/Entity;parserJLorg/ecoinformatics/datamanager/parser/generic/DataPackageParserInterface; emlStream dataPackage3Lorg/ecoinformatics/datamanager/parser/DataPackage;entities/[Lorg/ecoinformatics/datamanager/parser/Entity;metadataSysMeta metadataIDdataPidsmetadataIdentifiersentriesLjava/util/Map;resourceMapStructure entrySysMetaobjectFormatTypefileName extensiontempFileentryInputStreamentryPid fileNames pidMappingLjava/lang/StringBuffer;sysMetatempDirpidMappingFilezipNamebagFile zipWriter0Lgov/loc/repository/bagit/writer/impl/ZipWriter;"Lorg/dspace/foresite/OREException;Ljava/net/URISyntaxException;(Lorg/dspace/foresite/OREParserException;bagInputStream bagFactory%Lgov/loc/repository/bagit/BagFactory;bagLgov/loc/repository/bagit/Bag; tempFiles packagePids;:Ljava/util/Set;uLjava/util/Map;>;Ljava/util/Map;>;>;LLjava/util/Map; Ljava/util/List;q Ct D E Fe GarchiveneedModifyDateupdateSystemMetadata(Lorg/dataone/service/types/v1/Session;Lorg/dataone/service/types/v1/Identifier;Lorg/dataone/service/types/v2/SystemMetadata;)ZcurrentSysmetacurrentModiDatecommingModiDatefromCNrunnerLjava/lang/Runnable;success H getStatus=(Lorg/dataone/service/types/v1/Session;)Ljava/io/InputStream;checkAddRestrictiveAccessOnDOI](Lorg/dataone/service/types/v2/SystemMetadata;Lorg/dataone/service/types/v2/SystemMetadata;)Vitemaccess publicUserisOldSysmetaPublicReadable oldAccess oldSysMetadoiidentifierIsDOIsidIsDOIgetCurrentNodeId.()Lorg/dataone/service/types/v1/NodeReference;isAuthoritativeNode,(Lorg/dataone/service/types/v1/Identifier;)Z nodeValueisReadOnlyMode()ZreadOnly(Ledu/ucsb/nceas/metacat/ReadOnlyChecker; access$000H(Ledu/ucsb/nceas/metacat/dataone/MNodeService;)Lorg/apache/log4j/Logger;x0()VavailableProcessorsnThreads SourceFileMNodeService.java +edu/ucsb/nceas/metacat/dataone/MNodeService   I J K L  M N O PD1Client.certificate.file Q R S T Ujava/lang/Booleandataone.nodeSynchronize V W S  U X2edu/ucsb/nceas/utilities/PropertyNotFoundExceptionMNodeService.constructor : can't find the property to indicate if the memeber node need to be synchronized. It will use the default value - true. Y Z2902290129002903 -org/dataone/service/exceptions/ServiceFailure&edu/ucsb/nceas/metacat/ReadOnlyCheckerlThe Metacat member node is on the read-only mode and your request can't be fulfiled. Please try again later.  [ \ ] ^ _-org/dataone/service/exceptions/InvalidRequest+org/dataone/service/exceptions/InvalidToken ` a+edu/ucsb/nceas/metacat/dataone/D1AuthHelper   b c d,org/dataone/service/exceptions/NotAuthorizedMThe provided identity does not have permission to delete objects on the Node. e f g h i a  j k l m13101210No session has been provided n1202#The provided identifier is invalid. o  p q rjava/sql/SQLExceptionjava/lang/StringBuilder The requested identifier s t0 couldn't be determined if it is unique since : u a2org/dataone/service/exceptions/IdentifierNotUnique1220 is already used by another object andtherefore can not be used for this object. Clients should choosea new identifier that is unique and retry the operation or use CN.reserveIdentifier() to reserve one. v S/edu/ucsb/nceas/metacat/McdbDocNotFoundException6The object with the provided identifier was not found.(The object with the provided identifier  can't be identified since - RMNodeService.update - the time spending on checking the validation of the old pid  and the new pid  is s w milli seconds. x Z cd y z { | } ~    12801200  NCan't determine if the client has the permission to update the object with id  since a Can't update the object with id iMNodeService.update - the time spending on checking if the user has the permission to update the old pid  with the new pid 4org/dataone/service/exceptions/InvalidSystemMetadata1300/Cannot include obsoletedBy when updating object BThe identifier provided in obsoletes does not match old Identifier An archived object can't be updated;The previous identifier has already been made obsolete by: fMNodeService.update - the time spending on checking the quality of the system metadata of the old pid 9The provided series id in the system metadata is invalid.The series id = in the system metadata doesn't match the previous series id A, so it should NOT exist. However, it was used by another object.u in the system metadata should NOT exist since the previous series id is null.However, it was used by another object.A in the system metadata shouldn't have the same value of the pid.VMNodeService.update - the time spending on checking the sid validation of the old pid   :UTF-8 H [java/io/IOException)The Node is unable to create the object: 0There was a problem converting the object to XML  : )The Node is unable to create the object. . since the properties are not configured well java/lang/ExceptionHMNService.update - couldn't write the metadata object to the disk since DMNService.update - couldn't write the data object to the disk since NMNodeService.update - the time spending on saving the object with the new pid        4 a User-Agent S [MNodeService.update - the time spending on updating/saving system metadata of the old pid # and saving the log information is   1190Could not register DOI: ^MNodeService.update - the time spending on registering the doi (if it is doi ) of the new pid RThe provided identity does not have permission to UPDATE the object identified by  on the Member Node.=MNodeService.update - the total time of updating the old pid  whth the new pid r [:MNodeService.removeIdFromIdentifierTable - the identifier  and local id M have been removed from the identifier table since the object creation failed ZSMNodeService.removeIdFromIdentifierTable - can't decide if the mapping of the pid  exists on the identifier table.1110)Session is required to WRITE to the Node.1102   anull { 1180gThe supplied system metadata is invalid. The obsoletes field cannot have a value when creating entries.iThe supplied system metadata is invalid. The obsoletedBy field cannot have a value when creating entries."The provided series id is invalid.The series identifier G in the system metadata couldn't be determined if it is unique since :  is already used by another object and therefore can not be used for this object. Clients should choose a new identifier that is unique and retry the operation or use CN.reserveIdentifier() to reserve one. 'org/dataone/service/exceptions/NotFound1100?Provited Identity doesn't have the WRITE permission on the pid Allowed to create: JMNodeService.replicate() called with parameters: Session.Subject =  identifier = y  Source NodeReference =2153GThe provided session or systemmetdata or sourceNode should NOT be null.:The provided identifier in the system metadata is invalid.0No session was provided to replicate identifier Z21522151 dAllowed to replicate: dataone.nodeId*org/dataone/service/types/v1/NodeReference U&Couldn't get dataone.nodeId property: >Object content not found on this node despite having localId: 9Can't read the object bytes properly, replica is invalid.  No replica found. Continuing.KCouldn't identify the local id of the object with the specified identifier  since - 3edu/ucsb/nceas/metacat/dataone/D1NodeVersionChecker  {MNRead Sv1  Gv2  !The version of MNRead service is  in the source node @ and it is not supported. Please check the information in the cn0MNodeService.getReplica() called for identifier 7Could not retrieve object to replicate (InvalidToken): 3Could not retrieve object to replicate (NotFound): 8Could not retrieve object to replicate (NotAuthorized): -org/dataone/service/exceptions/NotImplementedGCould not retrieve object to replicate (mn.getReplica NotImplemented): 9Could not retrieve object to replicate (ServiceFailure): 4org/dataone/service/exceptions/InsufficientResources@Could not retrieve object to replicate (InsufficientResources): Couldn't identify the local id of the identifier specified by -Synchronization for the object identified by  failed from a with message: D. Logging the event to the Metacat EventLog as a 'syncFailed' event."org/dataone/service/util/Constantspublicsynchronization_failedCould not log the error for: !MNodeService.getReplica() called.2183No session was provided.KMNodeService.getReplica() called with parameters: Session.Subject =  Identifier = %edu/ucsb/nceas/metacat/MetacatHandlerjava/util/Timer  ! " #21852181(The local id of the object specified by  couldn't be identified since $ % & ' (+Could not determine if node is authorized: Could not find the object  in this node - .Called D1Client.isNodeAuthorized(). Allowed =  for identifier $could not be returned due to error: 2182The pid , is not authorized to be read by the client.! can't be returned from the node. 1334133213331331 )  * + , - . Z F /+org/dataone/service/types/v2/SystemMetadatajava/lang/RuntimeExceptionSystemMetadata for pid ; couldn't be updated because it couldn't be found locally: 9We can't find the system metadata in the node for the id 0 m 6On updating the local copy of system metadata for pid 9, the CN reports it is not found. The error message was: ;Could not submit changed systemMetadata for indexing, pid:  ?)Could not set the replication status for  on the CN (InvalidToken):  on the CN (NotFound): $org/dataone/service/types/v1/Session @ }'org/dataone/service/types/v1/AccessRule A B C D E F G)org/dataone/service/types/v1/AccessPolicy H I2190;Session is required to generate an Identifier at this Node.UUID J K L urn:uuid:DOI M !edu/ucsb/nceas/ezid/EZIDException2191Could not generate DOI:  N O P O Q7edu/ucsb/nceas/metacat/common/query/EnabledQueryEngines pathquery  R S r0000&MNodeService.query - the query engine . hasn't been implemented or has been disabled.5org/dataone/service/types/v1_1/QueryEngineDescription1.0 T U4This is the traditional structured query for Metacat U U V W2edu/ucsb/nceas/metacat/shared/MetacatUtilExceptionCould not get index paths >)org/dataone/service/types/v1_1/QueryFieldIndexed field for path '' X U Y  Z  [   U \ ]solr:MNodeService.getQueryEngineDescription - the query engine  ^  _ ` aSolr server error4046The Metacat member node can't find the query engine - .org/dataone/service/types/v1_1/QueryEngineList b c U  java/util/ArrayList ? d eedu/ucsb/nceas/metacat/DBQuery f gJedu/ucsb/nceas/metacat/common/query/stream/ContentTypeByteArrayInputStream%edu/ucsb/nceas/metacat/MetaCatServlet h i  jtext/xml k UPathquery error3The query is ====================================  l0org/apache/solr/common/params/MultiMapSolrParams  m  n2821Solr server error: 2824The query engine g specified on the request isn't supported by the http post method. Now we only support the solr engine. o pjava/util/HashSet2822 qYMNodeService.query - this is a mn admin session, it will bypass the access control rules.1030java/io/ByteArrayOutputStream r s tjava/io/ByteArrayInputStream u v w x   eml y z8~~~~~~~~~~~~~~~~~~~~~~MNodeService.publish - the object  with format id  is an eml document.  4edu/ucsb/nceas/metacat/dataone/SystemMetadataFactory resourceMap_ No potential ORE map found for:  by the name convention. 4@IMNodeService.publish - found the ore map from the list when the index is s {IMNodeService.publish - No potential ORE map found for the metadata object/ by both the name convention or the solr query.4MNodeService.publish - we find the old ore document  for the metacat object >edu/ucsb/nceas/metacat/dataone/resourcemap/ResourceMapModifier  | } ~ u S   9 a L .rdf.xml U /edu/ucsb/nceas/metacat/dataone/SyncAccessPolicy HError attempting to sync access for data objects when publishing package/MNodeService.publish - the new ore document is  for the doi 1Could not generate new ORE for published object: $java/io/UnsupportedEncodingException+D1NodeService.editScienceMetadata() called. u  java/io/StringReader  @  !javax/xml/transform/dom/DOMSource  'javax/xml/transform/stream/StreamResult    8MNNodeService.editScienceMetadata - the new checksum is  with algorithm  for the new pid ! which is published from the pid (javax/xml/transform/TransformerExceptionYMNNodeService.editScienceMetadata(): Could not update the ID in the XML document for pid  : ( since the checksum can't be computed : Jfl=id,resourceMap&wt=xml&q=-obsoletedBy:[* TO *]+resourceMap:[* TO *]+id:""4fl=id,resourceMap&wt=xml&q=resourceMap:[* TO *]+id:" java/io/InputStreamReader  //arr[@name="resourceMap"]/str  B    A a)Error checking for resourceMap[s] on pid . fl=id,resourceMap&wt=xml&q=id:"2MNodeService.lookupOreRor - found the resource map28737The format type can't be null in the getpackage method.application/bagit-097 The format * is not supported in the getpackage method2871#gov/loc/repository/bagit/BagFactory java/util/HashMapjava/lang/StringBuffer   aRESOURCE    java/util/MapMETADATAdefault"edu/ucsb/nceas/metacat/DBTransform u -//W3C//HTML//ENjava/io/OutputStreamWriter  java/util/Hashtable1020qformat displaymoduleprintall package__dir  metadata.html  java/io/File  .css[^a-zA-Z0-9\-\.]_  -METADATA.pdf a /style/skins/java/io/FileInputStreamjava/io/FileOutputStream  a [ C  (pdf) data/ s Could not transform metadataeml:// rEorg/ecoinformatics/datamanager/parser/generic/Eml200DataPackageParser E  F  G a S S S ;  P x java/util/ListThe given pid H is not a package id (resource map id). Please use a package id instead.temp m u apid-mapping.txt-  S a data/ \W.zip .gov/loc/repository/bagit/writer/impl/ZipWriter  8edu/ucsb/nceas/metacat/util/DeleteOnCloseFileInputStream  org/dspace/foresite/OREExceptionjava/net/URISyntaxException&org/dspace/foresite/OREParserException29121350$The provided identifier was invalid. +MNodeService.archive - lock the identifier  in the system metadata map.-MNodeService.archive - unlock the identifier 1320QThe provided identity does not have permission to archive the object on the Node.48684869RThe system metadata object should NOT be null in the updateSystemMetadata request.:Please specify the id in the updateSystemMetadata request 4861}No Session - could not authorize for updating system metadata. If you are not logged in, please do so and retry the request.HWe can't find the current system metadata on the member node for the id dCan't determine if the client has the permission to update the system metacat of the object with id 6Can't update the system metacat of the object with id 4The system metadata modification date can't be null. m*Your system metadata modification date is V. It doesn't match our current system metadata modification date in the member node - a. Please check if you have got the newest version of the system metadata before the modification."Current authoriativeMemberNode is - but the value on the new system metadata is C. They don't match. Clients don't have the permission to change it.t but the value on the new system metadata is null. They don't match. Clients don't have the permission to change it.Current authoriativeMemberNode is null but the value on the new system metadata is not null. They don't match. 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