CN Purge and Installation Instructions –Version 858¶

cn-ucsb-1, cn-unm-1, cn-orc-1.dataone.org

apt-get --purge remove dataone-cn-metacat dataone-cn-mercury dataone-cn-rest-service dataone-cn-mnsynchronization

rm -rf /var/mercury
rm -rf /var/metacat
rm -rf /var/lib/dataone
rm /etc/init.d/mn-synchronize
rm /etc/init.d/mercury-indexer
rm -rf /var/log/dataone
rm /usr/share/java/cn-batchscheduler.jar
rm /usr/share/java/cn-mercuryscheduler.jar
rm -rf /var/lib/tomcat6/webapps/*
rm -rf /var/lib/tomcat6/logs/*

mkdir /var/lib/tomcat6/webapps
mkdir /var/lib/tomcat6/logs
mkdir /var/lib/dataone
mkdir /var/log/dataone
chown tomcat6.tomcat6  /var/log/dataone
cd /var/lib
chown tomcat6 tomcat6/webapps tomcat6/logs dataone
chgrp tomcat6 tomcat6/webapps tomcat6/logs dataone
cp /home/waltz/dataone/nodeList.xml /var/lib/dataone
chown tomcat6.tomcat6 /var/lib/dataone/nodeList.xml

cd /home/waltz/bin/
./reset

apt-get update
apt-get install dataone-cn-metacat dataone-cn-mercury dataone-cn-rest-service dataone-cn-mnsynchronization
(takes a couple minutes)

http://(cn-host-name)/knb/admin
(make sure all items are configured, including the database)
    Global - ensure username password
    Ignore Skins Specific Properties
    Database Installation/Upgrade - run scripts
    Geoserver - bypass


vi /etc/dataone/mn-synchronize/synchronization.properties
(edit the string 'NEED_TO_SET'.
 each cn has its own mn that it syncronizes, you will have to change that string
 to appear as the below depending on which cn you are editing
 cn-ucsb-1 = 'http://knb-mn.ecoinformatics.org'
 cn-unm-1 = 'http://dev-dryad-mn.dataone.org'
 cn-orc-1.dataone.org = 'http://daacmn.dataone.utk.edu' )

./postConfigure

ensure that the cert exists
ls /etc/ssl/certs/_.dataone.org.crt

 http://(cn-host-name)/knb/style/skins/dev/replControl.html

 In the 'Servers' box, click 'Add this server'
(cn-host-name)/knb/servlet/replication

Replicate xml doc To server (1 or 0)? 1
Replicate data file To server (1 or 0)?: 1
Localhost is a hub to server (1 or 0)?: 0
Download certificate from
(leave empty)

CN Reset and/or Upgrade –Version 3268¶

cd /home/waltz/bin/
./reset

apt-get update
apt-get upgrade

(at this point if there is an upgrade to dataone-cn-os-core, then after
the upgrade you will need to
cp /var/lib/dataone/nodeList.xml /home/waltz/bin/nodeList.xml
to make certain the lastest version of the nodeList will be installed properly)

Configure Metacat

http://(cn-host-name)/knb/admin
(make sure all items are configured, including the database)
    Global - ensure username password
    Ignore Skins Specific Properties - check Knb, 'Show Site List', 'Show Work Group List',  'Make knb default', and then push Save
    Database Installation/Upgrade - run scripts
    Geoserver - Set to Bypass

Configure Synchronize

vi or pico /etc/dataone/mn-synchronize/synchronization.properties
(edit the string 'NEED_TO_SET'.
 each cn has its own mn that it syncronizes, you will have to change that string
 to appear as the below depending on which cn you are editing
 cn-ucsb-1 = 'http://knb-mn.ecoinformatics.org'
 cn-unm-1 = 'http://dev-dryad-mn.dataone.org'
 cn-orc-1.dataone.org = 'http://daacmn.dataone.utk.edu' )

Finish Configuration of Mercury

./postConfigure


Set up Replication between 2 or more servers:

http://(cn-host-name)/knb/style/skins/dev/replControl.html

In the 'Servers' box, click 'Add this server'
(cn-host-name)/knb/servlet/replication

Replicate xml doc To server (1 or 0)? 1
Replicate data file To server (1 or 0)?: 1
Localhost is a hub to server (1 or 0)?: 0
Download certificate from
(leave empty)

CN KNB Service Update Instructions –Version 0¶

cn-ucsb-1, cn-unm-1, cn-orc-1.dataone.org

These are the steps that I followed to update metacat without deleting the database

sftp cn-ucsb-1.dataone.org
put knb.war
quit

ssh cn-ucb-1.dataone.org
sudo -s

/etc/init.d/tomcat6 stop
cd /var/lib/tomcat6/webapps/

rm knb.war.current
rm -rf knb
cp /home/waltz/knb.war .

mkdir knb
cd knb
jar -xvf ../knb.war > /dev/null
cd WEB-INF
HOSTNAME=`/usr/bin/perl -nle 'if (/^([\d\.]+)\s+(cn[^\s]+)\s*/) {$hostname= $2;exit;} END{print $hostname}' /etc/hosts`

sed -i.bak  's/\(server\.name\=\)localhost/\1'${HOSTNAME}'/;
      s/\(application\.deployDir\=\)/\1\/var\/lib\/tomcat6\/webapps/;
      s/\(application\.backupDir\=\)/\1\/var\/metacat\/\.knb/;
      s/\(application\.context=\)/\1knb/;
      s/\(application\.debugOutputFile\=\)\/tmp\/metacat\.debug/\1\/var\/metacat\/temporary\/metacat.debug/;
      s/\(application\.delimiteredOutputFile\=\)\/tmp\/metacat\.debug\.delimitered/\1\/var\/metacat\/temporary\/metacat\.debug\.delimitered/;
      s/\(database\.user\=\)/\1metacat/;
      s/\(database\.password\=\)/\1metacat/;
      s/\(database\.type\=\)/\1postgres/;
      s/\(database\.driver\=\)/\1org\.postgresql\.Driver/;
      s/\(database\.adapter\=\)/\1edu\.ucsb\.nceas\.dbadapter\.PostgresqlAdapter/;
      s/\(auth\.administrators\=\)/\1uid\=dataone\_cn\_metacat\,o\=DATAONE\,dc\=ecoinformatics\,dc\=org/;
      s/\(replication\.logdir\=\)/\1\/var\/metacat\/logs/;' \
      metacat.properties

cp /usr/share/metacat/debian/log4j.properties .

cd ../..

chown -R tomcat6.tomcat6 knb

mv knb.war knb.war.current


/etc/init.d/tomcat6 start


Configure Metacat

http://(cn-host-name)/knb/admin

Authentication Configuration -- check values, click Save
login
(make sure all items are configured, including the database)
    Global - Configure, ensure username password
    Skins Specific Properties - Configure, check Default, and then push Save
    Database Installation/Upgrade - Should not have to run scripts,if you do you failed updating
    Geoserver - Set to Bypass