d1_annotator changeshttp://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/changesd1_annotator changes#58 bump up D1 dependency versions (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/58/changes#detail0user/obrien/my-views/view/all/job/d1_annotator/58/changes#detail0Wed, 22 Feb 2017 23:07:46 +0000address not configured yet <nobody@nowhere>pom.xml #57 use parameter for dataset uri (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/57/changes#detail0user/obrien/my-views/view/all/job/d1_annotator/57/changes#detail0Wed, 22 Feb 2017 22:54:20 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/matcher/esor/CosineService.java #57 move concept list init into the loop so that each column can be (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/57/changes#detail1user/obrien/my-views/view/all/job/d1_annotator/57/changes#detail1Wed, 22 Feb 2017 22:54:20 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/generator/json/JsonAnnotatorGenerator.java #57 remove file id from the map as well as the file system, otherwise we (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/57/changes#detail2user/obrien/my-views/view/all/job/d1_annotator/57/changes#detail2Wed, 22 Feb 2017 22:54:20 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/store/FileBasedCache.java #56 per Jim, remove minScore and numResult parameters for round three ESOR (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail0user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail0Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/matcher/esor/EsorService.java #56 add context and unit parameters to ESOR concept lookup (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail1user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail1Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/matcher/esor/EsorService.java src/test/java/org/dataone/annotator/matcher/esor/EsorServiceTest.java src/main/java/org/dataone/annotator/generator/oa/OAAnnotationGenerator.java src/main/java/org/dataone/annotator/matcher/bioportal/BioPortalService.java src/test/java/org/dataone/annotator/matcher/bioportal/BioPortalServiceTest.java src/main/java/org/dataone/annotator/generator/AnnotationGenerator.java src/main/java/org/dataone/annotator/matcher/esor/EsorClient.java src/main/java/org/dataone/annotator/matcher/ConceptMatcher.java src/main/java/org/dataone/annotator/generator/json/JsonAnnotatorGenerator.java src/main/java/org/dataone/annotator/matcher/orcid/OrcidService.java src/main/java/org/dataone/annotator/matcher/ManualConceptMatcher.java #56 when label is missing, use the local name of the concept (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail2user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail2Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/ontology/MeasurementTypeGenerator.java #56 send ESOR parameters via JSON post instead of query string. sort (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail3user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail3Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/matcher/esor/EsorService.java #56 include EML abstract text as context when submitting attribute (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail4user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail4Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>pom.xml src/main/java/org/dataone/annotator/generator/json/JsonAnnotatorGenerator.java #56 use oboe.1.2 namespace (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail5user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail5Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/generator/AnnotationGenerator.java src/test/java/org/dataone/annotator/ontology/MeasurementTypeGeneratorTest.java #56 add the d1client connection monitoring property (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail6user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail6Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/resources/org/dataone/configuration/annotator.properties #56 update tests to refelct newer concept matches (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail7user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail7Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/test/java/org/dataone/annotator/matcher/esor/EsorServiceTest.java src/test/java/org/dataone/annotator/matcher/bioportal/BioPortalServiceTest.java #56 update expected concept return from ESOR service (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail8user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail8Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/test/java/org/dataone/annotator/matcher/esor/EsorServiceTest.java #56 add handling for new "cosine" service, per-document (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail9user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail9Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/resources/org/dataone/configuration/annotator.properties src/main/java/org/dataone/annotator/generator/json/JsonAnnotatorGenerator.java #56 add cosine service (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail10user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail10Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/matcher/esor/CosineService.java #56 add file-based caching for annotations - was taking waaaaay too long to (leinfelder)http://jenkins-ucsb-1.dataone.org/jenkins/user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail11user/obrien/my-views/view/all/job/d1_annotator/56/changes#detail11Mon, 17 Oct 2016 19:51:45 +0000address not configured yet <nobody@nowhere>src/main/java/org/dataone/annotator/store/JsonAnnotatorStore.java src/main/java/org/dataone/annotator/store/FileBasedCache.java